Package org.sbml._2001.ns.celldesigner

Class Summary

Class	Description
AntisenseRNA	For antisense RNA.
BaseProduct	Base product.
BaseProducts	List of base products.
BaseReactant	Base reactant.
BaseReactants	List of base reactants.
BindingRegion	Java class for bindingRegion complex type.
BindingSiteInBlockDiagram	Binding site on the left side of a block(protein).
Block	Block(protein) on canvas.
BlockDiagram	Block diagram for a protein.
Bounds	Bound of an object on canvas.
BoxSize	Box size.
BriefView	Data for drawing object with brief (compact) view.
Canvas	Canvas size of block diagrams.
Catalyzed	Catalyzed reaction.
CompartmentAlias	For compartment aliases.
CompartmentAnnotationType	Annotation for compartment.
CompartmentAnnotationType.Extension	Java class for anonymous complex type.
ComplexSpeciesAlias	For species aliases of complex species.
ComplexSpeciesAlias.BackupSize	Java class for anonymous complex type.
ComplexSpeciesAlias.Font	Java class for anonymous complex type.
ConnectScheme	Connection scheme.
DegradedInBlockDiagram	Degradation of a protein represented by the block.
DegradedShapeInBlockDiagram	Degradation symbol.
DoubleLine	Double line type to draw object.
EditPoints	Edit points.
EffectInBlockDiagram	Type and targets of an effect.
EffectSiteInBlockDiagram	Effect site on the lower side of a block(protein).
EffectTargetInBlockDiagram	Target protein of an effect.
EndPointInBlockDiagram	End point (residue, binding site, effect site, operator, link, degrade) of the link.
ExternalConnectionInBlockDiagram	External connection to a residue.
ExternalNameForResidue	External protein name connecting to residues.
Gene	For gene.
Group	Group of speciesAliases.
Halo	Halo around a block(protein).
Info	Java class for info complex type.
InnerPosition	Innerposition relative to a surrounding object.
InternalLinkInBlockDiagram	Link between operators, residues, binding sites, effect sites.
InternalOperatorInBlockDiagram	Operator inside of a block(protein) describing logic.
InternalOperatorValueInBlockDiagram	Assigned value to the operator.
KeyInfo	Java class for KeyInfo complex type.
Layer	Java class for layer complex type.
LayerCompartmentAlias	Java class for layerCompartmentAlias complex type.
LayerFreeLine	Java class for layerFreeLine complex type.
LayerLineBounds	Java class for layerLineBounds complex type.
LayerSpeciesAlias	Java class for layerSpeciesAlias complex type.
LayerSpeciesAlias.Font	Java class for anonymous complex type.
Line	Line color and width.
LineDirection	Line direction designator.
LineType2	Line color, width and curve style.
LinkAnchor	Link position designator to species alias.
LinkTarget	Target of a link.
ListOfAntisenseRNAs	List of asRNAs.
ListOfBindingRegions	Java class for listOfBindingRegions complex type.
ListOfBindingSitesInBlockDiagram	List of binding sites of a block(protein).
ListOfBlockDiagrams	List of block diagrams.
ListOfCatalyzedReactions	List of catalyzed reaction.
ListOfCompartmentAliases	List of compartment aliases.
ListOfComplexSpeciesAliases	List of complex species aliases.
ListOfComplexSpeciesAliases.ComplexSpeciesAlias	Java class for anonymous complex type.
ListOfEffectSitesInBlockDiagram	List of effect sites.
ListOfExternalConnectionsInBlockDiagram	List of external connections to residues.
ListOfExternalNamesForResidue	List of external names.
ListOfFreeLines	Java class for listOfFreeLines complex type.
ListOfGateMember	Java class for listOfGateMember complex type.
ListOfGenes	List of genes.
ListOfGroups	List of groups.
ListOfIncludedSpecies	List of species included by complexes.
ListOfInternalLinksInBlockDiagram	List of links of a block(protein).
ListOfInternalOperatorsInBlockDiagram	List of internal operators.
ListOfLayers	Java class for listOfLayers complex type.
ListOfLineDirection	List of line direction.
ListOfModification	List of line modification.
ListOfModificationResidues	List of modification residues.
ListOfModifications	List of residue modification.
ListOfModifications.Modification	Java class for anonymous complex type.
ListOfProductLinks	List of product link types.
ListOfProteins	List of proteins.
ListOfReactantLinks	List of reactant link types.
ListOfRegions	List of regions.
ListOfRegions.Region	Java class for anonymous complex type.
ListOfResiduesInBlockDiagram	List of residues on a block(protein).
ListOfRNAs	List of RNAs.
ListOfSpeciesAliases	List of simple species aliases.
ListOfSpeciesTag	Java class for listOfSpeciesTag complex type.
ListOfSquares	Java class for listOfSquares complex type.
ListOfStructuralStates	Java class for listOfStructuralStates complex type.
ListOfTexts	Java class for listOfTexts complex type.
ModelAnnotationType	Annotation for model.
ModelAnnotationType.Extension	Java class for anonymous complex type.
ModelDisplay	Model size, width and height.
Modification	Line modification.
ModificationResidue	For modification residue of proteins.
Notes	Notes as in sbml.
ObjectFactory	This object contains factory methods for each Java content interface and Java element interface generated in the org.sbml._2001.ns.celldesigner package.
Offset	Offset of a link from default position(center to center).
Paint	Paint scheme to paint object.
Point	Point of an object on canvas.
ProductLink	Product link type.
Protein	For protein.
ReactantLink	Reactant link type.
ReactionAnnotationType	Annotation for reaction.
ReactionAnnotationType.Extension	Java class for anonymous complex type.
Region	Specific region on nucleotide.
ResidueInBlockDiagram	Residue on the upper side of a block(protein).
RNA	For RNA.
SingleLine	Single line type to draw object.
Species	Species inside complexes.
Species.Annotation	Java class for anonymous complex type.
SpeciesAlias	For species aliases not forming complexes.
SpeciesAlias.Font	Java class for anonymous complex type.
SpeciesAnnotationType	Annotation for species.
SpeciesAnnotationType.Extension	Java class for anonymous complex type.
SpeciesIdentity	Identity to distinguish chemical species of CellDesigner's model.
SpeciesReferenceAnnotationType	Annotation for (modifier)speciesReference.
SpeciesReferenceAnnotationType.Extension	Java class for anonymous complex type.
SpeciesTag	Java class for SpeciesTag complex type.
StartingPointInBlockDiagram	Starting point (residue, binding site, operator) of the link.
State	Chemical "state" to distinguish chemical species derived from a root chemical.
StructuralStateAngle	Java class for structuralStateAngle complex type.
StructuralStates	Java class for StructuralStates complex type.
TagBounds	Java class for TagBounds complex type.
TagEdgeLine	Java class for TagEdgeLine complex type.
UsualView	Data for drawing object with usual view.
View	View state.