Uses of Package
org.sbml._2001.ns.celldesigner

Packages that use org.sbml._2001.ns.celldesigner

Package	Description
fr.curie.cd2sbgnml.xmlcdwrappers
org.sbml._2001.ns.celldesigner
org.sbml.sbml.level2.version4

Classes in org.sbml._2001.ns.celldesigner used by fr.curie.cd2sbgnml.xmlcdwrappers

Class and Description
AntisenseRNA For antisense RNA.
Bounds Bound of an object on canvas.
CompartmentAlias For compartment aliases.
ComplexSpeciesAlias For species aliases of complex species.
ConnectScheme Connection scheme.
EditPoints Edit points.
Gene For gene.
Layer Java class for layer complex type.
LayerSpeciesAlias Java class for layerSpeciesAlias complex type.
Line Line color and width.
LineDirection Line direction designator.
LineType2 Line color, width and curve style.
ListOfComplexSpeciesAliases.ComplexSpeciesAlias Java class for anonymous complex type.
ListOfModification List of line modification.
Modification Line modification.
Notes Notes as in sbml.
ProductLink Product link type.
Protein For protein.
ReactantLink Reactant link type.
RNA For RNA.
Species Species inside complexes.
SpeciesAlias For species aliases not forming complexes.

Classes in org.sbml._2001.ns.celldesigner used by org.sbml._2001.ns.celldesigner

Class and Description
AntisenseRNA For antisense RNA.
BaseProduct Base product.
BaseProducts List of base products.
BaseReactant Base reactant.
BaseReactants List of base reactants.
BindingRegion Java class for bindingRegion complex type.
BindingSiteInBlockDiagram Binding site on the left side of a block(protein).
Block Block(protein) on canvas.
BlockDiagram Block diagram for a protein.
Bounds Bound of an object on canvas.
BoxSize Box size.
BriefView Data for drawing object with brief (compact) view.
Canvas Canvas size of block diagrams.
Catalyzed Catalyzed reaction.
CompartmentAlias For compartment aliases.
CompartmentAnnotationType Annotation for compartment.
CompartmentAnnotationType.Extension Java class for anonymous complex type.
ComplexSpeciesAlias For species aliases of complex species.
ComplexSpeciesAlias.BackupSize Java class for anonymous complex type.
ComplexSpeciesAlias.Font Java class for anonymous complex type.
ConnectScheme Connection scheme.
DegradedInBlockDiagram Degradation of a protein represented by the block.
DegradedShapeInBlockDiagram Degradation symbol.
DoubleLine Double line type to draw object.
EditPoints Edit points.
EffectInBlockDiagram Type and targets of an effect.
EffectSiteInBlockDiagram Effect site on the lower side of a block(protein).
EffectTargetInBlockDiagram Target protein of an effect.
EndPointInBlockDiagram End point (residue, binding site, effect site, operator, link, degrade) of the link.
ExternalConnectionInBlockDiagram External connection to a residue.
ExternalNameForResidue External protein name connecting to residues.
Gene For gene.
Group Group of speciesAliases.
Halo Halo around a block(protein).
Info Java class for info complex type.
InnerPosition Innerposition relative to a surrounding object.
InternalLinkInBlockDiagram Link between operators, residues, binding sites, effect sites.
InternalOperatorInBlockDiagram Operator inside of a block(protein) describing logic.
InternalOperatorValueInBlockDiagram Assigned value to the operator.
KeyInfo Java class for KeyInfo complex type.
Layer Java class for layer complex type.
LayerCompartmentAlias Java class for layerCompartmentAlias complex type.
LayerFreeLine Java class for layerFreeLine complex type.
LayerLineBounds Java class for layerLineBounds complex type.
LayerSpeciesAlias Java class for layerSpeciesAlias complex type.
LayerSpeciesAlias.Font Java class for anonymous complex type.
Line Line color and width.
LineDirection Line direction designator.
LineType2 Line color, width and curve style.
LinkAnchor Link position designator to species alias.
LinkTarget Target of a link.
ListOfAntisenseRNAs List of asRNAs.
ListOfBindingRegions Java class for listOfBindingRegions complex type.
ListOfBindingSitesInBlockDiagram List of binding sites of a block(protein).
ListOfBlockDiagrams List of block diagrams.
ListOfCatalyzedReactions List of catalyzed reaction.
ListOfCompartmentAliases List of compartment aliases.
ListOfComplexSpeciesAliases List of complex species aliases.
ListOfComplexSpeciesAliases.ComplexSpeciesAlias Java class for anonymous complex type.
ListOfEffectSitesInBlockDiagram List of effect sites.
ListOfExternalConnectionsInBlockDiagram List of external connections to residues.
ListOfExternalNamesForResidue List of external names.
ListOfFreeLines Java class for listOfFreeLines complex type.
ListOfGateMember Java class for listOfGateMember complex type.
ListOfGenes List of genes.
ListOfGroups List of groups.
ListOfIncludedSpecies List of species included by complexes.
ListOfInternalLinksInBlockDiagram List of links of a block(protein).
ListOfInternalOperatorsInBlockDiagram List of internal operators.
ListOfLayers Java class for listOfLayers complex type.
ListOfLineDirection List of line direction.
ListOfModification List of line modification.
ListOfModificationResidues List of modification residues.
ListOfModifications List of residue modification.
ListOfModifications.Modification Java class for anonymous complex type.
ListOfProductLinks List of product link types.
ListOfProteins List of proteins.
ListOfReactantLinks List of reactant link types.
ListOfRegions List of regions.
ListOfRegions.Region Java class for anonymous complex type.
ListOfResiduesInBlockDiagram List of residues on a block(protein).
ListOfRNAs List of RNAs.
ListOfSpeciesAliases List of simple species aliases.
ListOfSpeciesTag Java class for listOfSpeciesTag complex type.
ListOfSquares Java class for listOfSquares complex type.
ListOfStructuralStates Java class for listOfStructuralStates complex type.
ListOfTexts Java class for listOfTexts complex type.
ModelAnnotationType Annotation for model.
ModelAnnotationType.Extension Java class for anonymous complex type.
ModelDisplay Model size, width and height.
Modification Line modification.
ModificationResidue For modification residue of proteins.
Notes Notes as in sbml.
Offset Offset of a link from default position(center to center).
Paint Paint scheme to paint object.
Point Point of an object on canvas.
ProductLink Product link type.
Protein For protein.
ReactantLink Reactant link type.
ReactionAnnotationType Annotation for reaction.
ReactionAnnotationType.Extension Java class for anonymous complex type.
Region Specific region on nucleotide.
ResidueInBlockDiagram Residue on the upper side of a block(protein).
RNA For RNA.
SingleLine Single line type to draw object.
Species Species inside complexes.
Species.Annotation Java class for anonymous complex type.
SpeciesAlias For species aliases not forming complexes.
SpeciesAlias.Font Java class for anonymous complex type.
SpeciesAnnotationType Annotation for species.
SpeciesAnnotationType.Extension Java class for anonymous complex type.
SpeciesIdentity Identity to distinguish chemical species of CellDesigner's model.
SpeciesReferenceAnnotationType Annotation for (modifier)speciesReference.
SpeciesReferenceAnnotationType.Extension Java class for anonymous complex type.
SpeciesTag Java class for SpeciesTag complex type.
StartingPointInBlockDiagram Starting point (residue, binding site, operator) of the link.
State Chemical "state" to distinguish chemical species derived from a root chemical.
StructuralStateAngle Java class for structuralStateAngle complex type.
StructuralStates Java class for StructuralStates complex type.
TagBounds Java class for TagBounds complex type.
TagEdgeLine Java class for TagEdgeLine complex type.
UsualView Data for drawing object with usual view.
View View state.

Classes in org.sbml._2001.ns.celldesigner used by org.sbml.sbml.level2.version4

Class and Description
CompartmentAnnotationType Annotation for compartment.
ModelAnnotationType Annotation for model.
ReactionAnnotationType Annotation for reaction.
SpeciesAnnotationType Annotation for species.
SpeciesReferenceAnnotationType Annotation for (modifier)speciesReference.