Modification (cd2sbgnml 0.4.2 API)

java.lang.Object
- org.sbml._2001.ns.celldesigner.Modification

public class Modification
extends Object

Line modification.

Java class for modification complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType name="modification">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <element name="connectScheme" type="{http://www.sbml.org/2001/ns/celldesigner}connectScheme" minOccurs="0"/>
         <element name="linkTarget" type="{http://www.sbml.org/2001/ns/celldesigner}linkTarget" maxOccurs="2" minOccurs="0"/>
         <element name="line" type="{http://www.sbml.org/2001/ns/celldesigner}line" minOccurs="0"/>
       </sequence>
       <attribute name="aliases" use="required">
         <simpleType>
           <restriction base="{http://www.sbml.org/2001/ns/celldesigner}SIdSet">
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="modifiers" use="required">
         <simpleType>
           <restriction base="{http://www.sbml.org/2001/ns/celldesigner}SIdSet">
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="type" use="required">
         <simpleType>
           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
             <enumeration value="CATALYSIS"/>
             <enumeration value="UNKNOWN_CATALYSIS"/>
             <enumeration value="INHIBITION"/>
             <enumeration value="UNKNOWN_INHIBITION"/>
             <enumeration value="HETERODIMER_ASSOCIATION"/>
             <enumeration value="TRANSCRIPTIONAL_ACTIVATION"/>
             <enumeration value="TRANSCRIPTIONAL_INHIBITION"/>
             <enumeration value="TRANSLATIONAL_ACTIVATION"/>
             <enumeration value="TRANSLATIONAL_INHIBITION"/>
             <enumeration value="PHYSICAL_STIMULATION"/>
             <enumeration value="MODULATION"/>
             <enumeration value="TRIGGER"/>
             <enumeration value="BOOLEAN_LOGIC_GATE_AND"/>
             <enumeration value="BOOLEAN_LOGIC_GATE_OR"/>
             <enumeration value="BOOLEAN_LOGIC_GATE_NOT"/>
             <enumeration value="BOOLEAN_LOGIC_GATE_UNKNOWN"/>
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="targetLineIndex" use="required">
         <simpleType>
           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
             <pattern value="-?[0-9]+,[0-9]+"/>
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="editPoints">
         <simpleType>
           <restriction base="{http://www.sbml.org/2001/ns/celldesigner}point2DList">
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="num0">
         <simpleType>
           <restriction base="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger">
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="num1">
         <simpleType>
           <restriction base="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger">
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="num2">
         <simpleType>
           <restriction base="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger">
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="modificationType">
         <simpleType>
           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
             <enumeration value="CATALYSIS"/>
             <enumeration value="UNKNOWN_CATALYSIS"/>
             <enumeration value="INHIBITION"/>
             <enumeration value="UNKNOWN_INHIBITION"/>
             <enumeration value="HETERODIMER_ASSOCIATION"/>
             <enumeration value="TRANSCRIPTIONAL_ACTIVATION"/>
             <enumeration value="TRANSCRIPTIONAL_INHIBITION"/>
             <enumeration value="TRANSLATIONAL_ACTIVATION"/>
             <enumeration value="TRANSLATIONAL_INHIBITION"/>
             <enumeration value="PHYSICAL_STIMULATION"/>
             <enumeration value="MODULATION"/>
             <enumeration value="TRIGGER"/>
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="offsetX">
         <simpleType>
           <restriction base="{http://www.w3.org/2001/XMLSchema}decimal">
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="offsetY">
         <simpleType>
           <restriction base="{http://www.w3.org/2001/XMLSchema}decimal">
           </restriction>
         </simpleType>
       </attribute>
     </restriction>
   </complexContent>
 </complexType>

Field Summary

Fields
Modifier and Type	Field and Description
`protected String`	`aliases`
`protected ConnectScheme`	`connectScheme`
`protected List<String>`	`editPoints`
`protected Line`	`line`
`protected List<LinkTarget>`	`linkTarget`
`protected String`	`modificationType`
`protected String`	`modifiers`
`protected BigInteger`	`num0`
`protected BigInteger`	`num1`
`protected BigInteger`	`num2`
`protected BigDecimal`	`offsetX`
`protected BigDecimal`	`offsetY`
`protected String`	`targetLineIndex`
`protected String`	`type`

Constructor Summary

Constructors
Constructor and Description

Modification()

Constructors
Constructor and Description
`Modification()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`String`	`getAliases()` Gets the value of the aliases property.
`ConnectScheme`	`getConnectScheme()` Gets the value of the connectScheme property.
`List<String>`	`getEditPoints()` Gets the value of the editPoints property.
`Line`	`getLine()` Gets the value of the line property.
`List<LinkTarget>`	`getLinkTarget()` Gets the value of the linkTarget property.
`String`	`getModificationType()` Gets the value of the modificationType property.
`String`	`getModifiers()` Gets the value of the modifiers property.
`BigInteger`	`getNum0()` Gets the value of the num0 property.
`BigInteger`	`getNum1()` Gets the value of the num1 property.
`BigInteger`	`getNum2()` Gets the value of the num2 property.
`BigDecimal`	`getOffsetX()` Gets the value of the offsetX property.
`BigDecimal`	`getOffsetY()` Gets the value of the offsetY property.
`String`	`getTargetLineIndex()` Gets the value of the targetLineIndex property.
`String`	`getType()` Gets the value of the type property.
`void`	`setAliases(String value)` Sets the value of the aliases property.
`void`	`setConnectScheme(ConnectScheme value)` Sets the value of the connectScheme property.
`void`	`setLine(Line value)` Sets the value of the line property.
`void`	`setModificationType(String value)` Sets the value of the modificationType property.
`void`	`setModifiers(String value)` Sets the value of the modifiers property.
`void`	`setNum0(BigInteger value)` Sets the value of the num0 property.
`void`	`setNum1(BigInteger value)` Sets the value of the num1 property.
`void`	`setNum2(BigInteger value)` Sets the value of the num2 property.
`void`	`setOffsetX(BigDecimal value)` Sets the value of the offsetX property.
`void`	`setOffsetY(BigDecimal value)` Sets the value of the offsetY property.
`void`	`setTargetLineIndex(String value)` Sets the value of the targetLineIndex property.
`void`	`setType(String value)` Sets the value of the type property.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - connectScheme
```
protected ConnectScheme connectScheme
```
  - linkTarget
```
protected List<LinkTarget> linkTarget
```
  - line
```
protected Line line
```
  - aliases
```
protected String aliases
```
  - modifiers
```
protected String modifiers
```
  - type
```
protected String type
```
  - targetLineIndex
```
protected String targetLineIndex
```
  - editPoints
```
protected List<String> editPoints
```
  - num0
```
protected BigInteger num0
```
  - num1
```
protected BigInteger num1
```
  - num2
```
protected BigInteger num2
```
  - modificationType
```
protected String modificationType
```
  - offsetX
```
protected BigDecimal offsetX
```
  - offsetY
```
protected BigDecimal offsetY
```
- Constructor Detail
  - Modification
```
public Modification()
```
- Method Detail
  - getConnectScheme
```
public ConnectScheme getConnectScheme()
```
    Gets the value of the connectScheme property.
    
    Returns:
    
    possible object is ConnectScheme
  - setConnectScheme
```
public void setConnectScheme(ConnectScheme value)
```
    Sets the value of the connectScheme property.
    
    Parameters:
    
    value - allowed object is ConnectScheme
  - getLinkTarget
```
public List<LinkTarget> getLinkTarget()
```
    Gets the value of the linkTarget property.
    This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the linkTarget property.
    For example, to add a new item, do as follows:
```
    getLinkTarget().add(newItem);
 
```
    Objects of the following type(s) are allowed in the list LinkTarget
  - getLine
```
public Line getLine()
```
    Gets the value of the line property.
    
    Returns:
    
    possible object is Line
  - setLine
```
public void setLine(Line value)
```
    Sets the value of the line property.
    
    Parameters:
    
    value - allowed object is Line
  - getAliases
```
public String getAliases()
```
    Gets the value of the aliases property.
    
    Returns:
    
    possible object is String
  - setAliases
```
public void setAliases(String value)
```
    Sets the value of the aliases property.
    
    Parameters:
    
    value - allowed object is String
  - getModifiers
```
public String getModifiers()
```
    Gets the value of the modifiers property.
    
    Returns:
    
    possible object is String
  - setModifiers
```
public void setModifiers(String value)
```
    Sets the value of the modifiers property.
    
    Parameters:
    
    value - allowed object is String
  - getType
```
public String getType()
```
    Gets the value of the type property.
    
    Returns:
    
    possible object is String
  - setType
```
public void setType(String value)
```
    Sets the value of the type property.
    
    Parameters:
    
    value - allowed object is String
  - getTargetLineIndex
```
public String getTargetLineIndex()
```
    Gets the value of the targetLineIndex property.
    
    Returns:
    
    possible object is String
  - setTargetLineIndex
```
public void setTargetLineIndex(String value)
```
    Sets the value of the targetLineIndex property.
    
    Parameters:
    
    value - allowed object is String
  - getEditPoints
```
public List<String> getEditPoints()
```
    Gets the value of the editPoints property.
    This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the editPoints property.
    For example, to add a new item, do as follows:
```
    getEditPoints().add(newItem);
 
```
    Objects of the following type(s) are allowed in the list String
  - getNum0
```
public BigInteger getNum0()
```
    Gets the value of the num0 property.
    
    Returns:
    
    possible object is BigInteger
  - setNum0
```
public void setNum0(BigInteger value)
```
    Sets the value of the num0 property.
    
    Parameters:
    
    value - allowed object is BigInteger
  - getNum1
```
public BigInteger getNum1()
```
    Gets the value of the num1 property.
    
    Returns:
    
    possible object is BigInteger
  - setNum1
```
public void setNum1(BigInteger value)
```
    Sets the value of the num1 property.
    
    Parameters:
    
    value - allowed object is BigInteger
  - getNum2
```
public BigInteger getNum2()
```
    Gets the value of the num2 property.
    
    Returns:
    
    possible object is BigInteger
  - setNum2
```
public void setNum2(BigInteger value)
```
    Sets the value of the num2 property.
    
    Parameters:
    
    value - allowed object is BigInteger
  - getModificationType
```
public String getModificationType()
```
    Gets the value of the modificationType property.
    
    Returns:
    
    possible object is String
  - setModificationType
```
public void setModificationType(String value)
```
    Sets the value of the modificationType property.
    
    Parameters:
    
    value - allowed object is String
  - getOffsetX
```
public BigDecimal getOffsetX()
```
    Gets the value of the offsetX property.
    
    Returns:
    
    possible object is BigDecimal
  - setOffsetX
```
public void setOffsetX(BigDecimal value)
```
    Sets the value of the offsetX property.
    
    Parameters:
    
    value - allowed object is BigDecimal
  - getOffsetY
```
public BigDecimal getOffsetY()
```
    Gets the value of the offsetY property.
    
    Returns:
    
    possible object is BigDecimal
  - setOffsetY
```
public void setOffsetY(BigDecimal value)
```
    Sets the value of the offsetY property.
    
    Parameters:
    
    value - allowed object is BigDecimal

Class Modification

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

connectScheme

linkTarget

line

aliases

modifiers

type

targetLineIndex

editPoints

num0

num1

num2

modificationType

offsetX

offsetY

Constructor Detail

Modification

Method Detail

getConnectScheme

setConnectScheme

getLinkTarget

getLine

setLine

getAliases

setAliases

getModifiers

setModifiers

getType

setType

getTargetLineIndex

setTargetLineIndex

getEditPoints

getNum0

setNum0

getNum1

setNum1

getNum2

setNum2

getModificationType

setModificationType

getOffsetX

setOffsetX

getOffsetY

setOffsetY