Hierarchy For All Packages

Package Hierarchies:

• fr.curie.cd2sbgnml,
• fr.curie.cd2sbgnml.graphics,
• fr.curie.cd2sbgnml.model,
• fr.curie.cd2sbgnml.xmlcdwrappers,
• org.sbml._2001.ns.celldesigner,
• org.sbml.sbml.level2.version4,
• org.w3._1998.math.mathml

Class Hierarchy

• java.lang.Object
  • fr.curie.cd2sbgnml.xmlcdwrappers.AliasInfoWrapper
  • fr.curie.cd2sbgnml.xmlcdwrappers.AliasWrapper
  • org.w3._1998.math.mathml.Annotation
  • org.w3._1998.math.mathml.AnnotationXml
  • org.sbml._2001.ns.celldesigner.AntisenseRNA
  • javafx.application.Application
    • fr.curie.cd2sbgnml.App
  • org.sbml._2001.ns.celldesigner.BaseProduct
  • org.sbml._2001.ns.celldesigner.BaseProducts
  • org.sbml._2001.ns.celldesigner.BaseReactant
  • org.sbml._2001.ns.celldesigner.BaseReactants
  • org.sbml._2001.ns.celldesigner.BindingRegion
  • org.sbml._2001.ns.celldesigner.BindingSiteInBlockDiagram
  • org.sbml._2001.ns.celldesigner.Block
  • org.sbml._2001.ns.celldesigner.BlockDiagram
  • org.sbml._2001.ns.celldesigner.Bounds
  • org.sbml._2001.ns.celldesigner.BoxSize
  • org.sbml._2001.ns.celldesigner.BriefView
  • org.sbml._2001.ns.celldesigner.Canvas
  • org.sbml._2001.ns.celldesigner.Catalyzed
  • fr.curie.cd2sbgnml.Cd2SbgnmlScript
  • fr.curie.cd2sbgnml.CellDesignerSBFCModel (implements org.sbfc.converter.models.GeneralModel)
  • org.w3._1998.math.mathml.Ci
  • org.w3._1998.math.mathml.Cn
  • org.sbml._2001.ns.celldesigner.CompartmentAlias
  • org.sbml._2001.ns.celldesigner.CompartmentAnnotationType
  • org.sbml._2001.ns.celldesigner.CompartmentAnnotationType.Extension
  • fr.curie.cd2sbgnml.xmlcdwrappers.CompartmentWrapper (implements fr.curie.cd2sbgnml.xmlcdwrappers.IAnnotationsFeature, fr.curie.cd2sbgnml.xmlcdwrappers.INotesFeature)
  • org.sbml._2001.ns.celldesigner.ComplexSpeciesAlias
    • org.sbml._2001.ns.celldesigner.ListOfComplexSpeciesAliases.ComplexSpeciesAlias
  • org.sbml._2001.ns.celldesigner.ComplexSpeciesAlias.BackupSize
  • org.sbml._2001.ns.celldesigner.ComplexSpeciesAlias.Font
  • org.sbml._2001.ns.celldesigner.ConnectScheme
  • org.w3._1998.math.mathml.Csymbol
  • org.sbml._2001.ns.celldesigner.DegradedInBlockDiagram
  • org.sbml._2001.ns.celldesigner.DegradedShapeInBlockDiagram
  • org.sbml._2001.ns.celldesigner.DoubleLine
  • org.sbml._2001.ns.celldesigner.EditPoints
  • org.sbml._2001.ns.celldesigner.EffectInBlockDiagram
  • org.sbml._2001.ns.celldesigner.EffectSiteInBlockDiagram
  • org.sbml._2001.ns.celldesigner.EffectTargetInBlockDiagram
  • org.sbml._2001.ns.celldesigner.EndPointInBlockDiagram
  • org.sbml._2001.ns.celldesigner.ExternalConnectionInBlockDiagram
  • org.sbml._2001.ns.celldesigner.ExternalNameForResidue
  • org.sbml._2001.ns.celldesigner.Gene
  • org.sbfc.converter.GeneralConverter
    • fr.curie.cd2sbgnml.CD2SBGNML
    • fr.curie.cd2sbgnml.SBGNML2CD
  • fr.curie.cd2sbgnml.model.GenericReactionElement
    • fr.curie.cd2sbgnml.model.ReactantModel
    • fr.curie.cd2sbgnml.model.ReactionNodeModel
      • fr.curie.cd2sbgnml.model.AssocDissoc
      • fr.curie.cd2sbgnml.model.LogicGate
      • fr.curie.cd2sbgnml.model.Process
  • fr.curie.cd2sbgnml.model.GenericReactionModel
    • fr.curie.cd2sbgnml.model.AssociationReactionModel
    • fr.curie.cd2sbgnml.model.DissociationReactionModel
    • fr.curie.cd2sbgnml.model.SimpleReactionModel
  • fr.curie.cd2sbgnml.graphics.GeometryUtils
  • fr.curie.cd2sbgnml.graphics.Glyph
  • org.sbml._2001.ns.celldesigner.Group
  • org.sbml._2001.ns.celldesigner.Halo
  • org.sbml._2001.ns.celldesigner.Info
  • org.sbml._2001.ns.celldesigner.InnerPosition
  • org.sbml._2001.ns.celldesigner.InternalLinkInBlockDiagram
  • org.sbml._2001.ns.celldesigner.InternalOperatorInBlockDiagram
  • org.sbml._2001.ns.celldesigner.InternalOperatorValueInBlockDiagram
  • org.sbml._2001.ns.celldesigner.KeyInfo
  • fr.curie.cd2sbgnml.Launcher
  • org.sbml._2001.ns.celldesigner.Layer
  • org.sbml._2001.ns.celldesigner.LayerCompartmentAlias
  • org.sbml._2001.ns.celldesigner.LayerFreeLine
  • org.sbml._2001.ns.celldesigner.LayerLineBounds
  • org.sbml._2001.ns.celldesigner.LayerSpeciesAlias
  • org.sbml._2001.ns.celldesigner.LayerSpeciesAlias.Font
  • org.sbml._2001.ns.celldesigner.Line
  • org.sbml._2001.ns.celldesigner.LineDirection
  • org.sbml._2001.ns.celldesigner.LineType2
  • fr.curie.cd2sbgnml.xmlcdwrappers.LineWrapper
  • fr.curie.cd2sbgnml.graphics.Link
  • org.sbml._2001.ns.celldesigner.LinkAnchor
  • fr.curie.cd2sbgnml.model.LinkModel
  • org.sbml._2001.ns.celldesigner.LinkTarget
  • org.sbml._2001.ns.celldesigner.ListOfAntisenseRNAs
  • org.sbml._2001.ns.celldesigner.ListOfBindingRegions
  • org.sbml._2001.ns.celldesigner.ListOfBindingSitesInBlockDiagram
  • org.sbml._2001.ns.celldesigner.ListOfBlockDiagrams
  • org.sbml._2001.ns.celldesigner.ListOfCatalyzedReactions
  • org.sbml._2001.ns.celldesigner.ListOfCompartmentAliases
  • org.sbml._2001.ns.celldesigner.ListOfComplexSpeciesAliases
  • org.sbml._2001.ns.celldesigner.ListOfEffectSitesInBlockDiagram
  • org.sbml._2001.ns.celldesigner.ListOfExternalConnectionsInBlockDiagram
  • org.sbml._2001.ns.celldesigner.ListOfExternalNamesForResidue
  • org.sbml._2001.ns.celldesigner.ListOfFreeLines
  • org.sbml._2001.ns.celldesigner.ListOfGateMember
  • org.sbml._2001.ns.celldesigner.ListOfGenes
  • org.sbml._2001.ns.celldesigner.ListOfGroups
  • org.sbml._2001.ns.celldesigner.ListOfIncludedSpecies
  • org.sbml._2001.ns.celldesigner.ListOfInternalLinksInBlockDiagram
  • org.sbml._2001.ns.celldesigner.ListOfInternalOperatorsInBlockDiagram
  • org.sbml._2001.ns.celldesigner.ListOfLayers
  • org.sbml._2001.ns.celldesigner.ListOfLineDirection
  • org.sbml._2001.ns.celldesigner.ListOfModification
  • org.sbml._2001.ns.celldesigner.ListOfModificationResidues
  • org.sbml._2001.ns.celldesigner.ListOfModifications
  • org.sbml._2001.ns.celldesigner.ListOfModifications.Modification
  • org.sbml._2001.ns.celldesigner.ListOfProductLinks
  • org.sbml._2001.ns.celldesigner.ListOfProteins
  • org.sbml._2001.ns.celldesigner.ListOfReactantLinks
  • org.sbml._2001.ns.celldesigner.ListOfRegions
  • org.sbml._2001.ns.celldesigner.ListOfResiduesInBlockDiagram
  • org.sbml._2001.ns.celldesigner.ListOfRNAs
  • org.sbml._2001.ns.celldesigner.ListOfSpeciesAliases
  • org.sbml._2001.ns.celldesigner.ListOfSpeciesTag
  • org.sbml._2001.ns.celldesigner.ListOfSquares
  • org.sbml._2001.ns.celldesigner.ListOfStructuralStates
  • org.sbml._2001.ns.celldesigner.ListOfTexts
  • fr.curie.cd2sbgnml.Main
  • org.w3._1998.math.mathml.MathBase
    • org.w3._1998.math.mathml.Apply
    • org.w3._1998.math.mathml.Bvar
    • org.w3._1998.math.mathml.Lambda
    • org.w3._1998.math.mathml.Math
    • org.w3._1998.math.mathml.NodeContainer
    • org.w3._1998.math.mathml.Otherwise
    • org.w3._1998.math.mathml.Piece
    • org.w3._1998.math.mathml.Piecewise
    • org.w3._1998.math.mathml.Semantics
  • org.sbml._2001.ns.celldesigner.ModelAnnotationType
  • org.sbml._2001.ns.celldesigner.ModelAnnotationType.Extension
  • org.sbml._2001.ns.celldesigner.ModelDisplay
  • fr.curie.cd2sbgnml.xmlcdwrappers.ModelWrapper
  • org.sbml._2001.ns.celldesigner.Modification
  • org.sbml._2001.ns.celldesigner.ModificationResidue
  • com.sun.xml.bind.marshaller.NamespacePrefixMapper
    • fr.curie.cd2sbgnml.xmlcdwrappers.Utils.DefaultNamespacePrefixMapper
  • org.sbml._2001.ns.celldesigner.Notes
  • org.w3._1998.math.mathml.ObjectFactory
  • org.sbml._2001.ns.celldesigner.ObjectFactory
  • org.sbml.sbml.level2.version4.ObjectFactory
  • org.sbml._2001.ns.celldesigner.Offset
  • java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
    • fr.curie.cd2sbgnml.App.TextOutputStream
  • org.sbml._2001.ns.celldesigner.Paint
  • org.sbml._2001.ns.celldesigner.Point
  • org.sbml._2001.ns.celldesigner.ProductLink
  • org.sbml._2001.ns.celldesigner.Protein
  • org.sbml._2001.ns.celldesigner.ReactantLink
  • fr.curie.cd2sbgnml.xmlcdwrappers.ReactantWrapper
    • fr.curie.cd2sbgnml.xmlcdwrappers.LogicGateWrapper
  • org.sbml._2001.ns.celldesigner.ReactionAnnotationType
  • org.sbml._2001.ns.celldesigner.ReactionAnnotationType.Extension
  • fr.curie.cd2sbgnml.model.ReactionModelFactory
  • fr.curie.cd2sbgnml.xmlcdwrappers.ReactionWrapper (implements fr.curie.cd2sbgnml.xmlcdwrappers.IAnnotationsFeature, fr.curie.cd2sbgnml.xmlcdwrappers.INotesFeature)
  • org.sbml._2001.ns.celldesigner.Region
    • org.sbml._2001.ns.celldesigner.ListOfRegions.Region
  • org.sbml._2001.ns.celldesigner.ResidueInBlockDiagram
  • fr.curie.cd2sbgnml.xmlcdwrappers.ResidueWrapper
  • org.sbml._2001.ns.celldesigner.RNA
  • org.sbml.sbml.level2.version4.SBase
    • org.sbml.sbml.level2.version4.Event
    • org.sbml.sbml.level2.version4.EventAssignment
    • org.sbml.sbml.level2.version4.FunctionDefinition
    • org.sbml.sbml.level2.version4.KineticLaw
    • org.sbml.sbml.level2.version4.ListOfEventAssignments
    • org.sbml.sbml.level2.version4.ListOfModifierSpeciesReferences
    • org.sbml.sbml.level2.version4.ListOfParameters
    • org.sbml.sbml.level2.version4.ListOfSpeciesReferences
    • org.sbml.sbml.level2.version4.ListOfUnits
    • org.sbml.sbml.level2.version4.MathField
    • org.sbml.sbml.level2.version4.OriginalCompartment
      • org.sbml.sbml.level2.version4.Compartment
    • org.sbml.sbml.level2.version4.OriginalModel
      • org.sbml.sbml.level2.version4.Model
    • org.sbml.sbml.level2.version4.OriginalModel.ListOfCompartments
    • org.sbml.sbml.level2.version4.OriginalModel.ListOfEvents
    • org.sbml.sbml.level2.version4.OriginalModel.ListOfFunctionDefinitions
    • org.sbml.sbml.level2.version4.OriginalModel.ListOfParameters
    • org.sbml.sbml.level2.version4.OriginalModel.ListOfReactions
    • org.sbml.sbml.level2.version4.OriginalModel.ListOfRules
    • org.sbml.sbml.level2.version4.OriginalModel.ListOfSpecies
    • org.sbml.sbml.level2.version4.OriginalModel.ListOfUnitDefinitions
    • org.sbml.sbml.level2.version4.OriginalReaction
      • org.sbml.sbml.level2.version4.Reaction
    • org.sbml.sbml.level2.version4.OriginalSpecies
      • org.sbml.sbml.level2.version4.Species
    • org.sbml.sbml.level2.version4.Parameter
    • org.sbml.sbml.level2.version4.Rule
      • org.sbml.sbml.level2.version4.AlgebraicRule
      • org.sbml.sbml.level2.version4.AssignmentRule
      • org.sbml.sbml.level2.version4.RateRule
    • org.sbml.sbml.level2.version4.Sbml
    • org.sbml.sbml.level2.version4.SimpleSpeciesReference
      • org.sbml.sbml.level2.version4.OriginalModifierSpeciesReference
        • org.sbml.sbml.level2.version4.ModifierSpeciesReference
      • org.sbml.sbml.level2.version4.OriginalSpeciesReference
        • org.sbml.sbml.level2.version4.SpeciesReference
    • org.sbml.sbml.level2.version4.StoichiometryMath
    • org.sbml.sbml.level2.version4.Unit
    • org.sbml.sbml.level2.version4.UnitDefinition
  • org.sbml.sbml.level2.version4.SBase.Notes
  • fr.curie.cd2sbgnml.Sbgnml2CdScript
  • org.sbfc.converter.models.SBGNModel (implements org.sbfc.converter.models.GeneralModel)
    • fr.curie.cd2sbgnml.SBGNSBFCModel
  • fr.curie.cd2sbgnml.SBGNUtils
  • org.w3._1998.math.mathml.SepType
  • org.sbml._2001.ns.celldesigner.SingleLine
  • org.sbml._2001.ns.celldesigner.Species
  • org.sbml._2001.ns.celldesigner.Species.Annotation
  • org.sbml._2001.ns.celldesigner.SpeciesAlias
  • org.sbml._2001.ns.celldesigner.SpeciesAlias.Font
  • org.sbml._2001.ns.celldesigner.SpeciesAnnotationType
  • org.sbml._2001.ns.celldesigner.SpeciesAnnotationType.Extension
  • org.sbml._2001.ns.celldesigner.SpeciesIdentity
  • org.sbml._2001.ns.celldesigner.SpeciesReferenceAnnotationType
  • org.sbml._2001.ns.celldesigner.SpeciesReferenceAnnotationType.Extension
  • org.sbml._2001.ns.celldesigner.SpeciesTag
  • fr.curie.cd2sbgnml.xmlcdwrappers.SpeciesWrapper (implements fr.curie.cd2sbgnml.xmlcdwrappers.IAnnotationsFeature, fr.curie.cd2sbgnml.xmlcdwrappers.INotesFeature)
  • org.sbml._2001.ns.celldesigner.StartingPointInBlockDiagram
  • org.sbml._2001.ns.celldesigner.State
  • org.sbml._2001.ns.celldesigner.StructuralStateAngle
  • org.sbml._2001.ns.celldesigner.StructuralStates
  • fr.curie.cd2sbgnml.xmlcdwrappers.StyleInfo
  • org.sbml._2001.ns.celldesigner.TagBounds
  • org.sbml._2001.ns.celldesigner.TagEdgeLine
  • fr.curie.cd2sbgnml.xmlcdwrappers.TextWrapper
  • org.sbml._2001.ns.celldesigner.UsualView
  • fr.curie.cd2sbgnml.xmlcdwrappers.Utils
  • org.sbml._2001.ns.celldesigner.View

Interface Hierarchy

• fr.curie.cd2sbgnml.xmlcdwrappers.IAnnotationsFeature
• fr.curie.cd2sbgnml.xmlcdwrappers.INotesFeature

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • fr.curie.cd2sbgnml.App.ConvertionChoice
    • fr.curie.cd2sbgnml.xmlcdwrappers.ReactantWrapper.ReactantType
    • fr.curie.cd2sbgnml.xmlcdwrappers.SpeciesWrapper.ReferenceType
    • fr.curie.cd2sbgnml.xmlcdwrappers.LogicGateWrapper.LogicGateType
    • fr.curie.cd2sbgnml.xmlcdwrappers.ReactionType
    • fr.curie.cd2sbgnml.xmlcdwrappers.AliasWrapper.AliasType
    • fr.curie.cd2sbgnml.xmlcdwrappers.ModificationLinkType
    • fr.curie.cd2sbgnml.model.ReactionNodeModel.Orientation
    • fr.curie.cd2sbgnml.graphics.SbgnShape
    • fr.curie.cd2sbgnml.graphics.CdShape
    • fr.curie.cd2sbgnml.graphics.AnchorPoint
    • org.w3._1998.math.mathml.CsymbolURI
    • org.sbml.sbml.level2.version4.UnitKind